Molecular Phylogenetics and Evolution
Vol. 11, No. 3, April, pp. 351–360, 1999
Article ID mpev.1998.0566, available online at http://www.idealibrary.com on
Phylogenetic Relationships of African Killifishes in the
Genera Aphyosemion and Fundulopanchax Inferred
from M itochondrial DNA Sequences
William J. M urphy1 and Glen E. Collier
Department of Biological Sciences, The University of Tulsa, 600 S. College Avenue, Tulsa, Oklahoma 74104
Received May 12, 1997; revised June 17, 1998
We have analyzed the phylogenetic relationships of
52 species representing all defined species groups (J. J.
Scheel, 1990, Atlas of Killifishes of the Old World, 448
pp.) of the African aplocheiloid fish genera Aphyosemion and Fundulopanchax in order to examine their
interrelationships and to reveal trends of karyotypic
evolution. The data set comprised 785 total nucleotides
from the mitochondrial 12S rRNA and cytochrome b
genes. The molecular-based topologies analyzed by
both maximum parsimony and neighbor-joining support the monophyly of most previously defined species
groups within these two killifish genera. The genus
Aphyosemion is monophyletic except for the nested
position of Fundulopanchax kunzi (batesi group; subgenus Raddaella) within this clade, suggesting that
this taxon was improperly assigned to Fundulopanchax. The remaining Fundulopanchax species sampled
were supported as being monophyletic in most analyses. Relationships among the species groups in both
genera were not as strongly supported, suggesting that
further data will be required to resolve these relationships. Additional sampling from the 16S rRNA gene
allowed further resolution of relationships within Fundulopanchax, more specifically identifying the nonannual scheeli group as the basal lineage of this otherwise annual genus. Chromosomal evolution within
Aphyosemion has been episodic, with the evolution of a
reduced n 5 9–10 metacentric complement having
occurred in multiple, independent lineages. Polarity of
chromosomal reductions within the elegans species
group appears to support previous hypotheses concerning mechanisms of karyotypic change within the genus
Aphyosemion. r 1999 Academic Press
INTRODUCTION
African aplocheiloid killifishes are currently assigned to four speciose genera (Aphyosemion, Epiplatys,
1 Present address: Laboratory of Genomic Diversity, National
Cancer Institute, FCRDC, Frederick, MD 21702.
Fundulopanchax, and Nothobranchius) and six monotypic genera (Adamus, Foerschichthys, Fundulosoma,
Pronothobranchius, Aphyoplatys, and Episemion). The
composition and relationships of these genera have undergone numerous changes as our knowledge of these fishes
has grown. The greatest number of changes have occurred
with regard to the genus Aphyosemion Myers 1924.
The genus Aphyosemion was originally divided into
three subgenera: Aphyosemion, Fundulopanchax, and
Adinops. Those species assigned to Adinops were from
east Africa and were later removed to the genus
Nothobranchius. The remaining species and subsequent taxa assigned to these subgenera could be divided by distributional criteria and independently by
phenotypic criteria. The vast majority of these fishes
are found in small streams in the understory of the
rainforest (Scheel, 1990). The rainforest of equitorial
Africa is cleanly divided into western and eastern
blocks by the Dahomey Gap, a strip of savanna habitat
that extends to the coast in Benin, Togo, and eastern
Ghana. In 1966, Clausen recognized the distinctiveness
of those species west of the Dahomey Gap. Subsequent
workers have identified additional morphological characters that distinguish these western taxa (Zee and
Wildekamp, 1995) and recent DNA sequence data
(Murphy, 1997, Murphy and Collier, 1997, 1999) clearly
identify the western forms as a distinct clade not
closely related to the eastern taxa. Thus the remaining
problem with the genus Aphyosemion involves those
eastern species formerly assigned to the subgenera
Aphyosemion and Fundulopanchax.
The subgenus Fundulopanchax was elevated to generic level by Parenti (1981) based on two characters.
Zee and Wildekamp (1995) dispute the diagnostic value
of one of these characters but added four new characters defining Fundulopanchax. Prominent among the
life history traits that distinguish Aphyosemion and
Fundulopanchax is annualism. Annual fishes (Myers
1942, 1955) are those that deposit their eggs in the
substrate where they withstand the dessication of an
annual dry season to hatch once the rains resume.
351
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MURPHY AND COLLIER
Members of Fundulopanchax are believed to be annual
while members of Aphyosemion are not (Parenti, 1981;
Wildekamp, 1993).
Chromosome complements are relatively well conserved in teleostean fishes, particularly within the
immense acanthomorph clade (sensu Johnson and Patterson, 1993) in which the predominant diploid karyotype is 2n 5 48 (Sola et al., 1981). Significant deviations
from this number have occurred in only a handful of
these fish species. One order in particular, the Cyprinodontiformes (killifishes), displays a striking propensity for clade-specific karyotypic rearrangement. Perhaps the best example is the aplocheiloid genus
Aphyosemion, which shows more inter- and intraspecific chromosomal rearrangements (Scheel, 1990) than
perhaps any other fish genus. Our knowledge of the
types of mechanisms behind karyotypic evolution, and
its potential contribution to speciation within this
genus, have been hampered by the lack of a phylogenetic framework for this diverse group.
The specific aim of this work was to use mitochondrial DNA sequences to assess the monophyly and
composition of Aphyosemion and Fundulopanchax, to
determine the monophyly of recently proposed subgenera and species groups (Scheel, 1990; Table 1) within
these genera, and to determine the polarity of chromosomal rearrangements within the molecular phylogeny.
Further, this enlarged data set has allowed further
consideration of the origin of annualism (Murphy and
Collier, 1997) within these genera. We sampled 36
populations of 32 described and 4 undescribed species
of Aphyosemion and 16 species of Fundulopanchax. In
total these represent 14 of Scheel’s (1990) 15 species
groups. The 15th group, composed of a single species,
Pronothobranchius kiyawensis, has been subsequently
excluded from Aphyosemion on the basis of both morphological and molecular characters (Parenti, 1981; Murphy, 1997).
MATERIALS AND METHODS
A list of the taxa examined and their sources is in the
Appendix. Mitochondrial DNA was extracted from
muscle or liver tissues. Mitochondrial DNA extractions
and amplification protocols were performed as previously described (Murphy and Collier, 1996). Some of the
sequences have been previously reported (see Table 1).
We sequenced a 360-bp region of the cytochrome b
(cytb) gene and a 425-bp region of the 12S rRNA gene.
The primers used were L14724 and H15149 (Kocher et
al., 1989; Meyer et al., 1990) for the cytb segment and
L1091 and H1478 (Kocher et al., 1989) for the 12S
rRNA segment. Primers 16Sar-L and 16Sbr-H (Palumbi
et al., 1991) were used to amplify a region of the 16S
rRNA gene for Fundulopanchax taxa. The new DNA
sequences were generated with an automated sequencer (ABI 373 Stretch). Symmetric amplification
TABLE 1
Taxa Under Study, Proposed Species Groups and
Their Abbreviations Used in Figures (Scheel, 1990), and
Various Subgeneric Names Assigned to Specific Taxa
Species group1/
species sampled
Genus Aphyosemion
bivittatum group (BIV)
bivittatum,* volcanum, sp. LEC 93/27
calliurum group (CAL)
ahli, australe,* calliurum, celiae
cameronense group (CAM)
cameronense, maculatum, mimbon
coeleste group (COL)
aureum, citrinepinnis, coeleste, occelatum
elegans group (ELE)
christyi, cognatum (2), decorsei, elegans
(3), lamberti, melanopteron, punctatum, rectogoense, wildekampi
exiguum group (EXI)
bualanum, exiguum
georgiae group (GEO)
cyanostictum
striatum group (STR)
exigoideum, gabunense, louessense,
ogoense, primigenium, striatum
ungrouped (UG)
labarrei
Genus Fundulopanchax
arnoldi group (ARN)
filamentosum, robertsoni, walkeri
batesi group (BAT)
kunzi
gardneri group (GAR)
cinnamomeum, gardneri, mirabile*
gulare group (GUL)
deltaense, fallax, gulare, schwoiseri,
sjoestedi*
ndianum group (NDI)
amieti, ndianum
scheeli group (SCE)
santaisabellae, scheeli
Subgenus
Chromaphyosemion2
Mesoaphyosemion3
Mesoaphyosemion
Mesoaphyosemion
Mesoaphyosemion
Kathetys4
Diapteron5
Mesoaphyosemion
Mesoaphyosemion?
Paludopanchax6
Raddaella7
Paraphyosemion8
Gularopanchax9
Paraphyosemion10
Paraphyosemion8
Note. Generic divisions follow those of Parenti (1981). Numbers in
parentheses denote number of populations sampled. Data from taxa
marked with asterisks have previously been reported (Murphy and
Collier, 1997).
1 Scheel, 1990.
2 Radda, 1971.
3,6,9,10 Radda, 1977.
4,7 Huber, 1977.
5 Huber and Seegers, 1977.
8 Kottelat, 1976.
products were purified with 30,000 MW regenerated
cellulose filter devices (Millipore Inc.). Cycle sequencing using fluorescent-labeled terminators was performed using Ampli-Taq FS DNA polymerase (Applied
Biosystems Inc.). The reactions were purified free of
fluorescent terminators using Centri-Sep columns
(Princeton Separations) before loading onto a sequencing gel (6% Long-Ranger acrylamide, FMC).
PHYLOGENETIC RELATIONSHIPS OF AFRICAN KILLIFISHES
Sequences were initially aligned using the program
CLUSTAL W (Thompson et al., 1994). Manual adjustments were made to the preliminary alignment of the
rRNA segments. Regions of length variation due to
insertions or deletions were omitted from the analyses
when they could not be aligned without making assumptions concerning homology. The complete aligned data
sets were analyzed by maximum parsimony (MP) and
neighbor-joining (NJ; Saitou and Nei, 1987) methods.
Parsimony analyses were done with PAUP vers. 3.1.1
(Swofford, 1993). In all cases heuristic searches were
used (50 replicates, random addition of taxa, TBR
branch-swapping). A series of different weighting
schemes was applied to the parsimony analyses to
adjust for transitional saturation in increasingly divergent comparisons. This phenomenon is well documented in most animal groups, including previous
studies of aplocheiloid phylogeny using mitochondrial
DNA (Murphy and Collier, 1996, 1997). We employed
the following weighting strategies: (1) all sites given
equal weight; (2) all sites given equal weight, while
excluding first-codon-position leucine transitions and
all third-codon-position transitions in the cytochrome b
segment (conservative substitution, CS parsimony; Irwin et al., 1991); and (3) all transversions weighted five
times transitions (5:1 parsimony). These last two
weighting schemes attempt to resolve deeper divergences due to the greater conservation of the substitutions analyzed. Bootstrap values for all parsimony
analyses were based on 100 heuristic replicates generated in PAUP.
Neighbor-joining analyses were generated in MEGA
(vers. 1.01; Kumar et al., 1993) with indels or ambiguities deleted from the analyses. The Kimura twoparameter correction was used to account for transition
bias (Kimura, 1980). Confidence probabilities (PC;
Rzhetsky and Nei, 1992) for branches of the NJ tree
were assessed with the interior-branch test implemented in MEGA (vers. 1.01, Kumar et al., 1993). We
opted to use this method based on recent data suggesting that the bootstrap conservatively underestimates
the statistical support for groupings within a topology,
particularly when large numbers of taxa are being
analyzed (Sitnikova et al., 1995). All trees were rooted
with members from the genus Nothobranchius (N. kirki
and the monotypic subgenus Pronothobranchius kiyawense) and the allied monotypic genus Fundulosoma
thierryi (Parenti, 1981). A recent molecular analysis of
the major aplocheiloid genera demonstrated the sistergroup status of Nothobranchius to a monophyletic
Aphyosemion 1 Fundulopanchax clade (Murphy and
Collier, 1997), justifying its use here as an outgroup.
RESULTS
Sequences obtained for this study have been deposited in GenBank under Accession Nos. AF002284–
353
AF002401. The total analyzed data set consisted of 763
bp, following removal of 22 bp of unalignable regions
from the 12S rRNA segment. This resulted in 317
variable sites, 265 being parsimony informative. Nucleotide frequencies for the entire data set were A 5 31%,
T 5 29%, C 5 23%, and G 5 17% and did not differ
significantly between taxa. Transition/transversion ratios varied from 1.1 to 19.0 in ingroup comparisons,
with many of the higher ratios (particularly among
closely related taxa) ranging between 5.0 and 10.0.
Parsimony analysis of the data set when all sites
were given equal weight resulted in eight 1806-step
trees having consistency indices of 0.271 and retention
indices of 0.565. Figure 1 shows the strict consensus of
these eight trees. The consistency and retention indices
are relatively low, most likely attributable to the large
number of taxa analyzed and the resulting increased
probability for homoplasious substitutions at rapidly
evolving sites. The members of the genus Aphyosemion
form a strongly supported group (94% of bootstrap
replications) which includes Fundulopanchax kunzi
nested within this clade. Bootstrap values are also very
high for nodes defining most of Scheel’s species groups
within Aphyosemion (Fig. 1). The remaining species of
Fundulopanchax form a monophyletic group, though
this clade is weakly supported by the bootstrap results
(50%). The relationships within Fundulopanchax are
also poorly resolved by these data, with the exception of
a few interspecific relationships, which corresponded to
some of Scheel’s (1990) species groups.
Weighted parsimony analyses were employed to resolve deeper relationships which might be obscured by
transitional saturation. Both weighting schemes (conservative substitutions and transversions weighted
greater than transitions) produced trees in general
agreement with the equal-weighted results (Fig. 1b),
with most of the species groups within Aphyosemion
being monophyletic, though the relationships between
species groups differed somewhat (see Discussion). The
5:1 parsimony resulted in two trees of 3520 steps (Fig.
1b). This weight was derived from the higher transition
rate among closely related taxa (see above). Results
based on weighting transversions between 5 and 10
times transitions were equivocal. The analysis based on
CS parsimony (eight trees, CI 5 0.442, RI 5 0.709)
differed primarily from all other analyses in that most
of the Fundulopanchax taxa (exclusive of F. kunzi) were
not resolved as being monophyletic, collapsing into a
basal polytomy in the consensus tree (not shown). The
bootstrap trees for these latter two weighted analyses
gave similar results (shown in Fig. 1b), strongly supporting most of the species groups within Aphyosemion,
with less resolution between species groups.
The neighbor-joining tree based on Kimura-corrected
distances (Fig. 2) was congruent with the strongly
supported aspects of the parsimony analyses, with
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MURPHY AND COLLIER
FIG. 1. (a) Consensus tree of eight equal-length cladograms (TL 5 1806; CI 5 0.271, RI 5 0.565) produced when all sites are given equal
weight. Numbers above branches are bootstrap values (Felsenstein, 1985) based on 100 replications. Values below 50% are not shown. Boxes
denote taxa sampled from each of Scheel’s (1990) species groups. Abbreviations for species groups are given in Table 1. (b) Consensus tree of
two equal-length cladograms (TL 5 3519) produced when all transversions were weighted five times greater than transitions. Numbers above
branches are bootstrap values (Felsenstein, 1985) based on 100 replications. Values in front of the slash are produced by the 5:1
transversion/transition weighting scheme. Values following the slash are produced by the bootstrap analysis using conservative substitutions
(See text for discussion). Values below 50% are not shown. Boxes denote taxa sampled from each of Scheel’s (1990) species groups.
Abbreviations for species groups are given in Table 1.
most of the differences revolving around branches with
low statistical support. Similar to parsimony, the species groups within Aphyosemion are strongly supported
(PC values), while the relationships between the groups
are weaker. Monophyly of Fundulopanchax, exclusive
of F. kunzi, received robust support from the interiorbranch test (Fig. 2). Complete deletion of sites with
gaps or the use of different distance corrections changed
the topology very little, these differences again being
observed among branches with low statistical support.
To further resolve the relationships with Fundulopanchax, an additional 472 bp of sequence data was
obtained from the 16S rRNA gene for each taxon. In
addition, we determined DNA sequences from all three
gene segments for two Fundulopanchax species not
sampled in the initial portion of this study—F. cinnamomeum and F. fallax. Some of the 16S rRNA sequences have been previously reported (Murphy
and Collier, 1997). Trees were rooted with two
Aphyosemion species, and the combined data set (1221
PHYLOGENETIC RELATIONSHIPS OF AFRICAN KILLIFISHES
355
FIG. 2. Neighbor-joining tree based on Kimura-corrected distances (Kimura, 1980) with pairwise deletion of gaps. Numbers above the
branches are confidence probabilities based on the interior-branch test implemented in MEGA vers. 1.01 (Kumar et al., 1993). Bars span taxa
assigned to Scheel’s (1990) species groups. Dashed lines connect nonadjacent members of these groups. Abbreviations are given in Table 1. A
distance scale is represented at the bottom.
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MURPHY AND COLLIER
bp, 330 variable sites, 220 of these parsimony informative) was analyzed by three parsimony methods (all
sites equal weight, conservative substitutions only, and
transversions weighted five times transitions), neighborjoining, and, as allowed by the smaller size of the data
set, maximum likelihood (fastDNAML; Olsen et al.,
1994). A 6-bp region of the 12S rRNA segment was
deleted due to ambiguity in alignment. Weighted parsimony, neighbor-joining, and maximum likelihood analyses all produced the topology shown in Fig. 3. Equalweighted parsimony generated a single tree congruent
with Fig. 3, with the exception of F. amieti being placed
basal in the gulare-group clade. The conservative substitution parsimony tree placed the scheeli group sister
to the gardneri-group/F. ndianum clade.
DISCUSSION
Phylogenetic Relationships within Aphyosemion
These molecular results are highly concordant with
previous species-group definitions of the genus Aphyosemion, created on the basis of karyology, meristics,
and geographical distributions (Scheel, 1990). Initial
sampling from the following species groups appear to
define monophyletic lineages which support Scheel’s
groupings: bivittatum, calliurum, cameronense, coeleste, exiguum, and striatum groups.
The georgiae species group [the subgenus Diapteron
of Huber and Seegers (1977)] is represented in the
combined dataset by a single taxon—A. cyanostictum.
Two additional species from this group, abacinum and
georgiae, were sampled; however, the cytochrome b
primers were unsuccessful with DNA from these taxa.
The results from 12S rRNA gene alone (not shown)
demonstrated that all three species comprise a monophyletic group, with abacinum being basal to the other
two. These data also resolved the georgiae group as the
sister taxon to the exiguum group, as did the combined
dataset. The nested placement of this clade within, and
not outside of, Aphyosemion does not support Seeger’s
(1980) suggestion of full generic rank for this group.
Two other Aphyosemion subgenera [Chromaphyosemion (Radda, 1977) and Kathetys (Huber, 1977)] are
also supported here by the apparent monophyly of the
corresponding bivittatum and exiguum species groups.
The subgenus Mesoaphyosemion (Radda, 1977), which
includes the cameronense, calliurum, coeleste, elegans,
scheeli, and striatum groups, is clearly not a monophyletic group based on these data.
FIG. 3. Phylogenetic hypothesis for the genus Fundulopanchax based on the expanded (cytochrome b 1 12S rRNA 1 16S rRNA) data set,
using Aphyosemion as an outgroup. Weighted parsimony (TL 5 1682), neighbor-joining with Kimura (1980) distances, and maximum
likelihood (2ln Likelihood 5 26010.09303) analyses all produced this same topology. The equal-weighted and conservative substitution
parsimony trees are discussed in the text. Numbers above the branches are bootstrap values (500 replicates) compatible with equal-weighted
parsimony, conservative substitution parsimony, and 5:1 (Tv:Ts) weighted parsimony. Numbers below the branches are the results of the
interior-branch test (Rzhetsky and Nei, 1992) of the neighbor-joining tree, implemented in MEGA (Kumar et al., 1993).
PHYLOGENETIC RELATIONSHIPS OF AFRICAN KILLIFISHES
The placement of the annual Fundulopanchax kunzi
within a larger clade of nonannual Aphyosemion species is quite unexpected. This species is part of a small
group (batesi group) (Scheel, 1990) distributed in upland habitats of eastern Cameroon and western Gabon
disjunct from the usual coastal ranges of the remaining
species of Fundulopanchax. The batesi group is, however, sympatric in some areas with the groups for which
the molecular data suggest phylogenetic similarity.
Recently, Zee and Wildekamp (1994) presented new
morphological characters defining Fundulopanchax
which are absent in members of the batesi group
(subgenus Raddaella). Chorionic puncti, present on the
surface of eggs of all annual Fundulopanchax species,
are lacking in the batesi group. All species of Fundulopanchax (with the exception of the arnoldi group) have
a mean of 16 or more circumpeduncular scales (cp
scales), while all species of Aphyosemion sampled (including the batesi group) have a mean of 14.2 or fewer
cp scales. Together, these two morphological characters
support the placement of the batesi group within
Aphyosemion.
The interrelationships between the Aphyosemion species groups are less apparent with these data. Our
results distinguish two major components within the
genus: (1) a strongly supported monophyletic clade
containing the batesi, cameronense, coeleste, and elegans groups, plus the ungrouped A. labarrei; and (2) a
basal grade composed of the bivittatum, calliurum,
exiguum, georgiae, and striatum groups. The former
group is centered primarily around the Congo River
system and its neighboring drainages in Gabon while
the latter group is centered primarily in Cameroon and
western Gabon.
The neighbor-joining tree also supports a basal bifurcation between the calliurum/bivittatum/exiguum/
georgiae groups and the remaining species groups,
though the monophyly of the former group is supported
by a very short internode, which receives no support
from the interior-branch test. However, when members
of Fundulopanchax are used as an outgroup for the NJ
analysis (data not shown) the calliurum group is found
as the most basal Aphyosemion clade, similar to parsimony analyses.
357
circumpeduncular scale rows characteristic of most
other Fundulopanchax is also characteristic of the
scheeli group (Zee and Wildekamp, 1995). Given our
topology for Fundulopanchax (Fig. 3) it would appear
that 16 or more cp scales is diagnostic for Fundulopanchax, being secondarily reduced in the derived arnoldi
group.
Biogeography
Basal members of both Aphyosemion (calliurum
group) and Fundulopanchax (scheeli group) occupy the
eastern region of Cameroon, suggesting that this region
may have been the center of diversification of these two
genera. The genus Aphyosemion subsequently diversified to the east with the terminal elegans group relatively recently filling the Zaire basin. The genus Fundulopanchax diversified westward in essentially coastal
habitats with the gardneri group expanding inland to
fill much of the area of Nigeria. Fundulopanchax
walkeri is the only member of the group to have crossed
the Dahomy Gap to occupy western habitat in Ghana
and Togo. Given its rather terminal position within the
combined Aphyosemion/Fundulopanchax clade, this
has been a relatively recent event. As such, it does not
invalidate the presumption of the epicontinental seas
being the viacariant event separating the eastern and
western aplocheiloid taxa (Murphy and Collier, 1997;
Murphy et al., 1999).
Annualism
The suite of traits referred to as annualism includes
behavioral components (bottom spawning), morphological components (enlarged dorsal and anal fins of males
and features of chorion structure), and developmental
components (embryonic diapauses). Within the suborder Aplocheiloidei, annualism has been hypothesized to
have arisen once and then to have been subsequently
lost and regained (Murphy and Collier, 1997). The more
detailed phylogenetic analysis presented here, with a
unique annual species (F. kunzi) nested within an
otherwise nonannual clade and the nonannual scheeli
group being the basal group of the otherwise facultatively annual Fundulopanchax, suggests that annualism is evolutionarily more plastic than once thought.
Phylogenetic Relationships within Fundulopanchax
In contrast to Aphyosemion, only two of Scheel’s
Fundulopanchax species groups are supported by the
current molecular data. One of these, the scheeli group,
is the lone nonannual taxon within Fundulopanchax,
inhabiting a restricted range in Cameroon and southeastern Nigeria. The monophyly of this distinctive set
of species is strongly supported (bootstrap 5 100% all
analyses, PC 5 0.99) and the addition of the 16S rRNA
segment stabilizes the basal position of the scheeli
group in weighted parsimony, neighbor-joining, and
maximum likelihood analyses. The elevated number of
Chromosomal Evolution
Acanthomorph fishes have extremely conserved
karyotypes, with the vast majority of taxa having a
diploid number of 44–48 chromosomes (Sola et al.,
1981). This number is particularly well conserved
within the speciose Percomorpha. While there are a few
scattered examples of significant reductions in number
throughout the acanthomorph fishes, the Order Cyprinodontiformes exhibits more documented inter- and
intraspecific variability than perhaps any other fish
group of equal phylogenetic diversity. The suborder
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MURPHY AND COLLIER
Cyprinodontoidei has well-conserved chromosome numbers, with the only significant examples of reduction
coming from the Goodeidae (Turner et al., 1985). Within
the sister-suborder Aplocheiloidei we see an increased
propensity for karyotypic reduction, the Neotropical
clade Rivulidae showing a few sporadic cases (n 5 10
for Pterolebias longipinnis, n 5 16–17 in a handful of
taxa) amid a larger trend of n 5 22–24 chromosomes
(Scheel, 1972, 1990; Garcia et al., 1993; Collier, unpublished data).
The African genera show by far the greatest karyological variability—the most striking case found within the
genus Aphyosemion (Scheel, 1990). Of the eight defined
species groups, three (bivittatum, calliurum, and elegans) contain taxa with karyotypes ranging from n 5
18 to n 5 9 or 10 (Fig. 4). The remaining species groups
show much less variability in chromosome number and
morphology. One of the more notable findings from this
study is that the species groups showing reduced
karyotypes are not phylogenetically restricted. Rather,
this propensity toward reduced karyotypes has occurred multiple times in Aphyosemion. A similar extreme reduction in haploid number has occurred in
Nothobranchius rachovii (n 5 9/18 arms; Scheel, 1972,
1990). This trend is particularly striking because the
populations having n 5 9 to 10 in Aphyosemion (14)
outnumber all other nonaplocheiloid teleosts having
FIG. 4. Hypothesis for chromosomal evolution within the genus
Aphyosemion. Numbers preceding the slash are haploid chromosome
numbers; numbers following the slash indicate the number of chromosome arms in the haploid complement. The range of values for each
terminal taxon are given on the respective branches. Karyological
data are derived from Scheel (1990). See text for discussion.
FIG. 5. Distribution of karyotypic data onto the phylogeny for the
monophyletic Zaire-basin components of the elegans group. Karyotypic information for each species is from Scheel (1990), except
‘‘elegans’’ Epoma and ‘‘cognatum’’ Lake Fwa (Collier, unpublished
data).
such reduced chromosome numbers: the bristlemouth
Gonostoma bathyphilum (Gonostomatidae), n 5 6; the
gouramie Sphaerichthys osphromonoides (Belontiidae), n 5 8; (Sola et al., 1981).
Within Aphyosemion a consensus topology can be
constructed based on the relationships depicted in both
parsimony and neighbor-joining analyses (Fig. 4). One
observation is that a karyotype of 19–20 haploid chromosomes is found in all of the basal species groups
(bivittatum, calliurum, exiguum, georgiae, and striatum), while the monophyletic ‘‘eastern’’ groups (batesi,
cameronense, coeleste, and elegans) have an apparently
ancestral upper limit of n 5 17 chromosomes. The
presence of n 5 20 chromosomes in the basal groups
suggests that it might be the ancestral karyotype for
the genus and that reduction has occurred in each
group. Determining the polarity of chromosome changes
within most of the species groups is currently not
possible without more complete sampling. However,
Scheel’s study of the calliurum group suggests that the
Nyong-North population of A. ahli (n 5 20, acrocentric
elements) is ancestral and gave rise to the remaining
karyotypes of reduced number in the group (Scheel,
1990). The more derived taxon-pair calliurum and
celiae have reduced karyotypes (10 populations, all
n # 12), and the grouping of these two taxa in all
analyses, together with some analyses showing ahli
and australe in basal positions, supports this general
trend towards reduced karyotypes.
Scheel hypothesized that aplocheiloid karyotypes
have evolved via two major mechanisms: pericentric
inversions and centric fusions (Scheel, 1972, 1990).
Pericentric inversions would move metacentric centromeres into terminal positions. Acrocentric chromosomes could then undergo centric fusions to return the
complement to one of oversized metacentric elements
and a reduced number of chromosomes. If this hypothesis is correct, we would expect to see basal taxa having
higher chromosome numbers and more acrocentric
elements, while terminal, derived taxa would have
lower haploid numbers with symmetrical (metacentric)
PHYLOGENETIC RELATIONSHIPS OF AFRICAN KILLIFISHES
complements. Our sampling of several described elegans group members presents us with a template for
testing this hypothesis of chromosomal evolution within
Aphyosemion. Figure 5 shows the NJ topology of the
elegans group. Analysis of this group alone produces a
similar topology with both parsimony (all sites equal
weight) and NJ methods. The distribution of karyotype
information onto this tree shows a gradual transition
from n 5 15, mostly acrocentric elements in A. melanopteron, to both elegans populations having n 5 10/18
arms in the upper lineage. All taxa in the bottom
lineage exhibit completely symmetrical complements of
n 5 9/18 arms, though there appears to be a rare
exception of an increase to 18 chromosomes/24 arms in
A. lamberti. This single example supports Scheel’s
hypothesis; however, more extensive sampling from
within other groups will be necessary to determine the
generality of this pattern of chromosomal evolution.
APPENDIX
The following is a list of specimens and their various
sources: Aphyosemion ahli, Kribi, Cameroon; A. aureum, GEB 94/9, Gabon; A. australe, chocolate Aquarium
strain (AS); A. bivittatum, Funge, Cameroon; A. bualanum, NDOP, Cameroon; A. calliurum, Epe, Cameroon;
A. cameronense halleri, EMS 90/6 Bikong, Gabon; A.
celiae winifrediae, New Butu, Cameroon; A. christyi,
HZ 85/8, Zaire; A. citrinepinnis, GEB 94/1, Gabon; A.
coeleste, RPC/5, Congo Republic; A. cognatum, Bandundu, Zaire; A. ‘‘cognatum,’’ Lake Fwa, Zaire; A. cyanostictum, Makouko, Gabon; A. decorsei, RCA 91/3, Central
African Republic; A. elegans, ‘‘EW,’’ Naoimda, Zaire; A.
elegans, Epoma, Congo Republic; A. elegans, Madimba,
Zaire; A. exigoideum, N’goudoufola, Gabon; A. exiguum,
GKCAR 90/4, Central African Republic; A. gabunense
boehmi, AS, Gabon; A. labarrei, AS, Zaire; A. lamberti,
NRSC, Gabon; A. louessense, Sibiti, Congo Republic; A.
maculatum, LEC93/4, Gabon; A. melanopteron (5congicum), AS, Zaire; A. mimbon, LEC93/19, Gabon; A.
occellatum, G-20, Gabon; A. ogoense, RPC/206, Gabon;
A. primigenium, 88/6, Gabon; A. punctatum, LEC,
Gabon; A. rectogoense, GAB 90/ABB, Gabon; A. striatum, Cape Esterias, Gabon; A. volcanum, Kumba,
Cameroon; A. wildekampi, AS; A. sp. LEC93/27, Gabon;
Fundulopanchax amieti, AS, Cameroon; F. cinnamomeum, AS, Cameroon; F. deltaense, AS, Nigeria; F.
fallax, Mamou, Ghana; F. filamentosum, AS, Nigeria; F.
gardneri, Akure, Nigeria; F. gulare, AS, Nigeria; F.
kunzi, CGE/91, Gabon; F. mirabile moense Takwai,
Cameroon; F. ndianum, AS, Nigeria; F. robertsoni, AS,
Cameroon; F. oeseri (5santaisabellae), AS, Bioko Island; F. scheeli, AS, Nigeria; F. schwoiseri, AS, Cameroon; F. sjoestedi, AS, Nigeria; F. walkeri, AS; Fundulosoma thierryi, AS; Nothobranchius kirki, Chilwa,
Malawi; Pronothobranchius kiyawense, AS. Collection
codes are detailed in Langton (1996).
359
ACKNOWLEDGMENTS
We thank the following people for supplying various specimens,
either wild-caught or aquarium strains: Brian Abbott, Jim Gasior, Liz
Hutchings, Mike Kromrez, Monty Lehman, Robert Langton, Dick
Martino, Leonard McCowiac, Craig Rees, Ralph Tepedino, Pete
Tirbak, Bob Tornatore, Darrell Ullisch, Hans Van Es, and Ed Warner.
Many of the aquarium strains were obtained through the American
Killifish Association. We are indebted to this group of naturalists/
hobbyists and various other international killifish organizations for
their past and continuing preservation of these fishes.
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